Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 1
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    40.0      5        1   10.0
Qui1     Qui    16.7      6        1   13.0
Qui2     Qui    50.0      2        1    9.0
Qui3     Qui    75.0      4        1    7.0
Qui4     Qui    66.7      3        1   11.5
Rio1     Rio   100.0      9        0   12.0
Rio2     Rio   100.0      2        0    6.5
Rio3     Rio   100.0      2        0    8.0
Rio4     Rio   100.0      8        0   21.5