Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 2
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    77136846 C>T  Pum=0.0  Qui=0.0  Rio=0.568

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      5        0   11.0
Qui1     Qui   100.0     10        0   14.0
Qui2     Qui   100.0      8        0   17.0
Qui3     Qui   100.0      3        0   10.0
Qui4     Qui    85.7      7        0   14.0
Rio1     Rio    50.0      8        1   19.0
Rio2     Rio    42.9      7        1   17.0
Rio3     Rio    42.9      7        1   13.5
Rio4     Rio    50.0      4        1   13.5