Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    71111470 T>C  Pum=0.5  Qui=0.577  Rio=0.0
    71111481 C>T  Pum=  Qui=0.765  Rio=0.0

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      1        0    4.0
Qui1     Qui    33.3      3        0    5.0
Qui2     Qui     0.0      3        1    8.0
Qui3     Qui     0.0      1        1    8.5
Qui4     Qui     0.0      1        1    4.0
Rio1     Rio   100.0      1        0    8.0
Rio2     Rio    33.3      3        0    7.5
Rio3     Rio   100.0      1        0    6.0
Rio4     Rio    50.0      2        0    6.0