Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 13
  seen in >= 2 oysters: 9
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 4  [CpG-destroying: 2]
    70585022 T>A  Pum=0.733  Qui=1.0  Rio=0.274
    70585060 G>A  Pum=0.4  Qui=0.793  Rio=0.03
    70585103 G>T  Pum=0.5  Qui=0.778  Rio=0.0
    70585106 C>T  Pum=0.375  Qui=1.0  Rio=0.409

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    60.0      5        0   11.0
Qui1     Qui    33.3      3        0   10.0
Qui2     Qui     0.0      8        0   13.0
Qui3     Qui     9.1     11        0   15.5
Qui4     Qui    14.3      7        0   11.0
Rio1     Rio    80.0     10        0   16.5
Rio2     Rio    87.5      8        0   16.5
Rio3     Rio    83.3      6        0   14.5
Rio4     Rio    88.9      9        0   15.0