Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 30
  seen in >= 2 oysters: 8
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    70581665 A>G  Pum=0.5  Qui=0.714  Rio=0.075

18 CpGs in target; 3 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    75.0     40        0    5.1
Qui1     Qui    58.3     24        0    5.3
Qui2     Qui    64.3     42        0    8.2
Qui3     Qui    63.6     22        0    5.8
Qui4     Qui    57.1     14        0    4.0
Rio1     Rio    87.7     73        0    8.7
Rio2     Rio    87.5     64        0    8.4
Rio3     Rio    88.3     77        0    8.1
Rio4     Rio    86.0     86        0    8.4