Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    70578201 C>T  Pum=  Qui=0.882  Rio=0.158

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    75.0      4        1    7.0
Qui1     Qui     0.0      5        1    9.5
Qui2     Qui     0.0      4        1    7.5
Qui3     Qui     0.0      6        1   14.0
Qui4     Qui     0.0      7        0    8.0
Rio1     Rio    85.7      7        0   12.0
Rio2     Rio    80.0      5        1   13.0
Rio3     Rio   100.0      3        0    4.0
Rio4     Rio   100.0      1        0    6.0