Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 13
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

9 CpGs in target; 7 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    69.0     58        0   12.4
Qui1     Qui    42.9     35        0    5.2
Qui2     Qui    47.9     71        0   10.5
Qui3     Qui    44.4     45        0    8.1
Qui4     Qui    65.9     41        0    7.8
Rio1     Rio    80.9     68        0   11.8
Rio2     Rio    84.8     33        0    7.0
Rio3     Rio    74.5     47        0   10.6
Rio4     Rio    75.0     48        0    8.2