Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    70.0     10        0   16.0
Qui1     Qui     0.0     11        0   18.0
Qui2     Qui     0.0     18        0   26.0
Qui3     Qui     3.4     29        0   47.0
Qui4     Qui    10.0     10        0   14.0
Rio1     Rio    31.2     16        0   22.0
Rio2     Rio    18.8     16        0   23.5
Rio3     Rio    22.2      9        0   14.0
Rio4     Rio    18.2     11        0   26.0