Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 36
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

8 CpGs in target; 4 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    46.9     32        0    6.7
Qui1     Qui    63.2     57        0    8.8
Qui2     Qui    35.0     40        0    7.7
Qui3     Qui    56.7     30        0    7.9
Qui4     Qui    65.3     49        0    7.8
Rio1     Rio    38.3     60        0    7.9
Rio2     Rio    25.0     48        0    7.9
Rio3     Rio    20.0     30        0    6.1
Rio4     Rio    26.9     26        0    5.6