Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 43
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

39 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     30        0    3.6
Qui1     Qui    14.5     62        0    6.1
Qui2     Qui    14.0     43        0    4.8
Qui3     Qui    19.6     51        0    3.7
Qui4     Qui     2.5     40        0    3.7
Rio1     Rio     2.9     35        0    5.1
Rio2     Rio    41.1     56        0    4.0
Rio3     Rio    15.0     40        0    2.6
Rio4     Rio    36.0     50        0    4.5