Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 2
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    43910700 G>A  Pum=0.273  Qui=0.867  Rio=0.367

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    63.6     11        0   12.5
Qui1     Qui     0.0      8        0   13.5
Qui2     Qui     0.0     12        0   13.0
Qui3     Qui     0.0      7        0   10.0
Qui4     Qui    25.0      4        0    5.0
Rio1     Rio    66.7      6        0    9.0
Rio2     Rio    50.0      4        0    9.0
Rio3     Rio    37.5      8        0   10.0
Rio4     Rio    46.2     13        0   15.0