Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 1
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    36.4     11        0   16.0
Qui1     Qui    38.5     13        0   20.0
Qui2     Qui    50.0     12        0   15.5
Qui3     Qui    42.1     19        0   24.0
Qui4     Qui    33.3      9        0   15.0
Rio1     Rio     5.9     17        0   18.0
Rio2     Rio    13.3     15        0   20.5
Rio3     Rio     7.7     13        0   16.0
Rio4     Rio     0.0     14        0   18.0