Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 21
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

56 CpGs in target; 3 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     2.9     34        0    2.7
Qui1     Qui     0.0     29        0    1.0
Qui2     Qui     0.0     44        0    1.2
Qui3     Qui     1.2     80        0    2.5
Qui4     Qui     0.0     88        0    2.5
Rio1     Rio    89.9     99        0    4.0
Rio2     Rio    70.4     98        0    2.6
Rio3     Rio    90.0     80        1    3.5
Rio4     Rio     0.0     30        0    1.0