Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 42
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

11 CpGs in target; 7 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    66.7     42        0    6.7
Qui1     Qui    60.5     38        0    8.0
Qui2     Qui    46.7     30        1   10.3
Qui3     Qui    65.2     46        0   11.5
Qui4     Qui    61.1     36        0    6.8
Rio1     Rio    63.9     36        0    9.5
Rio2     Rio    62.8     43        0    8.8
Rio3     Rio    80.0     20        0    4.1
Rio4     Rio    68.8     48        0   10.6