Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 11
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

13 CpGs in target; 12 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    62.5     48        0    9.4
Qui1     Qui    50.0     36        0    8.7
Qui2     Qui    62.5     48        0    7.6
Qui3     Qui    39.2     51        0    8.0
Qui4     Qui    41.8     55        0   10.5
Rio1     Rio    59.5     42        0   10.4
Rio2     Rio    74.5     47        0    7.2
Rio3     Rio    78.8     66        0    6.2
Rio4     Rio    53.3     45        0    8.0