Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 37
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

11 CpGs in target; 8 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    62.5     32        0    7.5
Qui1     Qui    34.2     38        0    6.1
Qui2     Qui    44.1     34        0    6.7
Qui3     Qui    46.8     47        0    7.6
Qui4     Qui    44.4     36        0    5.6
Rio1     Rio    49.3     69        0    8.1
Rio2     Rio    65.6     32        0    5.2
Rio3     Rio    61.3     31        0    6.6
Rio4     Rio    52.0     25        0    6.8