Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 1
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    83178923 G>A  Pum=1.0  Qui=1.0  Rio=0.333

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      4        0    6.0
Qui1     Qui     0.0      7        0    8.5
Qui2     Qui     0.0      6        0   10.0
Qui3     Qui     0.0     10        0   12.0
Qui4     Qui     0.0      5        0    5.0
Rio1     Rio    44.4      9        0   10.5
Rio2     Rio    50.0      6        0    5.5
Rio3     Rio    62.5      8        0    8.5
Rio4     Rio    62.5      8        0   12.0