Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 31
  seen in >= 2 oysters: 13
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

24 CpGs in target; 23 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    48.8    209        1   15.2
Qui1     Qui    47.8    182        1   15.2
Qui2     Qui    51.0    100        0   11.1
Qui3     Qui    50.3    171        2   17.0
Qui4     Qui    59.8    169        2   13.3
Rio1     Rio    60.5    157        1   13.1
Rio2     Rio    87.0    123        0    9.4
Rio3     Rio    57.5    106        0    8.3
Rio4     Rio    53.9    141        1   13.4