Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 21
  seen in >= 2 oysters: 7
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 4  [CpG-destroying: 3]
    82587214 C>A  Pum=0.714  Qui=0.955  Rio=0.4
    82587315 C>T  Pum=0.375  Qui=0.588  Rio=0.083
    82587728 C>T  Pum=0.833  Qui=0.9  Rio=0.25
    82587955 C>T  Pum=0.75  Qui=0.652  Rio=0.133

8 CpGs in target; 8 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    34.1     44        0   15.3
Qui1     Qui    51.6     31        0   12.2
Qui2     Qui    26.2     65        0   15.5
Qui3     Qui    45.5     44        0   12.9
Qui4     Qui    49.0     51        0   11.7
Rio1     Rio    79.3     29        0   10.2
Rio2     Rio    87.0     23        0    6.9
Rio3     Rio    70.2     47        0    7.7
Rio4     Rio    66.0     47        0   10.0