Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 37
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

25 CpGs in target; 7 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    76.6     94        0    9.2
Qui1     Qui    84.6     91        0    7.8
Qui2     Qui    79.7     59        0    9.8
Qui3     Qui    79.1     67        0    7.5
Qui4     Qui    82.1     56        0    6.6
Rio1     Rio    72.9     96        0    7.1
Rio2     Rio    68.2     66        0    8.3
Rio3     Rio    60.6     33        0    7.4
Rio4     Rio    24.7     85        0    9.4