Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 17
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

11 CpGs in target; 10 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    27.1     59        0    9.6
Qui1     Qui    48.1     54        0    8.2
Qui2     Qui    29.3     58        0    9.6
Qui3     Qui    22.0     59        0   10.0
Qui4     Qui    46.2     39        0    6.7
Rio1     Rio    50.0     66        0    9.4
Rio2     Rio    66.0     53        0    6.9
Rio3     Rio    48.0     50        0    9.1
Rio4     Rio    55.4     65        0   11.3