Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 10
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

8 CpGs in target; 3 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    74.3     35        0   10.1
Qui1     Qui    72.0     25        0    6.9
Qui2     Qui    85.7     14        0    8.8
Qui3     Qui    70.0     10        1    5.6
Qui4     Qui    52.6     19        0    8.1
Rio1     Rio    29.4     17        0    8.3
Rio2     Rio    66.7     15        0   10.0
Rio3     Rio    57.1     14        1    6.0
Rio4     Rio    53.3     30        1    8.3