Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 3]
    6404083 G>A  Pum=0.556  Qui=0.103  Rio=0.818
    6404094 G>A  Pum=0.556  Qui=0.125  Rio=0.824
    6404112 G>A  Pum=0.556  Qui=0.148  Rio=0.857

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    44.4      9        0    9.0
Qui1     Qui    85.7      7        0    7.0
Qui2     Qui    60.0     10        0   11.0
Qui3     Qui   100.0      6        0    6.0
Qui4     Qui    75.0      4        0    4.0
Rio1     Rio     0.0     11        0   13.0
Rio2     Rio     0.0     10        0   10.0
Rio3     Rio     0.0      5        0    5.0
Rio4     Rio     0.0      9        0    9.0