Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 69
  seen in >= 2 oysters: 21
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

20 CpGs in target; 10 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     39        1    5.6
Qui1     Qui    45.8     24        2    5.1
Qui2     Qui     8.7     46        2    6.4
Qui3     Qui    54.5    112        1    8.8
Qui4     Qui    80.6     36        1    5.6
Rio1     Rio     7.1     84        2    9.3
Rio2     Rio     3.6     28        0    6.0
Rio3     Rio    16.7     48        2    7.4
Rio4     Rio     0.0     40        1    6.4