Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 18
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

18 CpGs in target; 5 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    61.5    117        0    8.9
Qui1     Qui    46.1     89        0    5.8
Qui2     Qui    55.7    131        0    9.0
Qui3     Qui    92.5     80        0    6.5
Qui4     Qui    39.7     68        0    5.3
Rio1     Rio    87.4    103        0    6.7
Rio2     Rio    94.1     51        0    6.8
Rio3     Rio    97.8    139        0   11.0
Rio4     Rio    94.7     94        0    7.1