Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 15
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

15 CpGs in target; 5 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    61.1     36        0    7.2
Qui1     Qui    31.0     29        0    7.5
Qui2     Qui    46.7     15        0    8.9
Qui3     Qui    27.3     22        0    8.7
Qui4     Qui    42.1     19        0    9.0
Rio1     Rio    57.9     38        0    8.8
Rio2     Rio    70.6     34        0    7.6
Rio3     Rio    48.0     25        0    7.9
Rio4     Rio    53.6     28        0    8.9