Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 41
  seen in >= 2 oysters: 9
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

8 CpGs in target; 4 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    25.6     43        1   10.0
Qui1     Qui    75.8     33        0    6.3
Qui2     Qui    81.2     32        0    7.6
Qui3     Qui    70.2     57        0    9.3
Qui4     Qui    53.8     26        0    6.7
Rio1     Rio    38.5     39        0    8.3
Rio2     Rio    51.5     33        1    7.4
Rio3     Rio    57.5     40        0    6.4
Rio4     Rio    43.2     37        0    7.3