pos ref alt in_target n_oysters_with_alt alt_freq_Pum alt_freq_Qui alt_freq_Rio pop_differentiated cpg_destroying Pum1 Qui1 Qui2 Qui3 Qui4 Rio1 Rio2 Rio3 Rio4 5340378 A T False 2 0.571 0.062 0.619 True False 0.57/7 0.00/5 1.00/1 0.00/1 0.00/9 1.00/6 1.00/3 0.11/9 1.00/3 5340397 A G False 1 0.0 0.067 0.235 False False 0.00/7 0.00/5 1.00/1 0.00/1 0.00/8 0.50/6 0.00/8 0.33/3 5340410 C T False 1 0.6 0.0 0.364 False True 0.60/5 0.00/1 0.00/4 1.00/2 0.00/7 1.00/2 5340426 T A False 1 0.091 0.0 False False 0.00/1 0.25/4 0.00/2 0.00/5 0.00/3 0.00/6 0.00/1 5340431 T A False 1 0.167 0.0 False False 0.00/1 0.25/4 1.00/1 0.00/2 0.00/5 0.00/3 0.00/6 0.00/1 5340433 T C False 1 0.091 0.0 False False 0.00/1 0.00/4 0.00/1 0.00/2 0.25/4 0.00/3 0.00/5 0.00/1 5340439 A G False 1 0.231 0.444 False False 0.00/1 0.50/4 0.00/1 0.33/3 0.00/5 1.00/3 0.00/5 1.00/1 5340442 T A False 1 0.167 0.0 False False 0.00/1 0.00/3 0.00/1 0.00/3 0.40/5 0.00/2 0.00/4 0.00/1 5340446 T A False 1 0.25 0.0 False False 0.00/1 0.00/3 0.00/1 0.33/3 0.40/5 0.00/2 0.00/4 0.00/1 5340450 A T False 1 0.154 0.0 False False 0.00/1 0.00/4 0.50/2 0.00/3 0.25/4 0.00/2 0.00/4 0.00/1 5340455 C A False 0 0.167 0.25 False False 0.00/1 0.00/2 0.00/1 0.00/1 0.50/2 0.00/1 0.33/3 5340456 T A False 1 0.077 0.167 False False 0.00/1 0.00/4 0.00/2 0.00/3 0.25/4 0.00/2 0.33/3 0.00/1 5340458 A G False 0 0.0 0.25 False False 0.00/1 0.00/4 0.00/2 0.00/3 0.00/3 0.50/2 0.00/1 0.00/1 5340459 T A False 0 0.0 0.25 False False 0.00/1 0.00/4 0.00/2 0.00/3 0.00/3 0.50/2 0.00/1 0.00/1 5340460 T A False 0 0.0 0.75 False False 1.00/1 0.00/4 0.00/2 0.00/3 0.00/3 1.00/2 0.00/1 1.00/1 5340538 C T False 0 0.25 False True 0.00/1 0.00/1 0.00/1 1.00/1 5340547 A C False 0 0.25 False False 0.33/3 0.50/2 0.00/1 0.00/2 5340589 A G False 0 0.25 False False 1.00/1 0.00/1 0.00/1 0.00/1 5340622 T G False 0 0.25 False False 0.00/1 1.00/1 0.00/1 0.00/1 5341535 C G False 0 0.25 False False 0.00/2 0.50/2 0.00/1 5341540 C A False 0 0.25 False False 0.00/2 0.50/2 0.00/1 5341601 C A False 0 0.25 False False 0.50/2 0.00/2 0.00/1 5341631 G T False 0 0.25 False False 0.00/1 0.00/2 0.50/2 0.00/1 0.00/1 1.00/1 5341632 C T False 0 0.5 False True 1.00/1 0.00/2 0.33/3 1.00/2 0.00/2 5341634 G T False 0 0.25 False False 0.00/1 0.00/2 0.50/2 0.00/1 0.00/1 1.00/1 5341635 A T False 1 0.143 0.0 False False 0.00/1 0.25/4 0.00/3 0.20/5 0.00/2 0.00/1 0.00/1 0.00/3 0.00/1 5341637 T C False 1 0.267 0.5 False False 0.00/1 0.25/4 0.00/3 0.17/6 1.00/2 0.00/1 0.00/1 0.67/3 1.00/1 5341638 G T False 0 0.571 False False 0.00/1 0.33/3 1.00/1 0.67/3 0.00/1 0.00/1 0.00/1 5341644 A G False 1 0.0 0.111 False False 0.00/1 0.00/5 0.00/3 0.00/6 0.00/2 0.00/1 0.00/1 0.25/4 0.00/3 5341659 G T False 1 0.25 0.0 False False 0.00/1 0.33/3 0.00/1 0.25/4 0.00/2 0.00/2 0.00/1 5341661 G A False 1 0.25 0.2 False True 0.00/1 0.33/3 0.00/1 0.25/4 0.50/2 0.00/2 0.00/1 5341667 C A False 1 0.077 0.0 False False 0.00/3 0.00/3 0.25/4 0.00/3 0.00/1 0.00/2 0.00/3 0.00/4 5341676 A G False 1 0.05 0.0 False False 0.00/1 0.00/7 0.00/4 0.00/5 0.25/4 0.00/4 0.00/3 0.00/5 0.00/5 5341678 A G False 1 0.05 0.0 False False 0.00/1 0.00/7 0.00/4 0.00/5 0.25/4 0.00/4 0.00/3 0.00/5 0.00/5 5341679 T A False 1 0.05 0.0 False False 0.00/1 0.00/7 0.00/4 0.00/5 0.25/4 0.00/4 0.00/3 0.00/5 0.00/5 5341680 A G False 3 0.1 0.353 False False 1.00/1 0.00/7 0.25/4 0.00/5 0.25/4 0.75/4 0.33/3 0.20/5 0.20/5 5341681 T G False 1 0.048 0.0 False False 0.00/1 0.00/7 0.00/4 0.00/6 0.25/4 0.00/4 0.00/3 0.00/5 0.00/5 5341682 T G False 1 0.048 0.0 False False 0.00/1 0.00/7 0.00/4 0.00/6 0.25/4 0.00/4 0.00/3 0.00/5 0.00/5 5341683 T A False 1 0.048 0.0 False False 0.00/1 0.00/7 0.00/4 0.00/6 0.25/4 0.00/4 0.00/3 0.00/5 0.00/6 5341798 A T False 6 0.25 0.1 0.833 True False 0.25/8 0.00/13 0.44/9 0.00/12 0.00/6 1.00/12 0.67/6 0.56/9 1.00/9 5341805 A G False 1 0.111 0.025 0.167 False False 0.11/9 0.00/13 0.10/10 0.00/11 0.00/6 0.27/11 0.17/6 0.10/10 0.11/9 5341834 G C False 1 0.0 0.125 0.0 False False 0.00/4 0.25/4 0.00/2 0.00/2 0.00/3 0.00/2 0.00/3 5341838 A G False 1 0.0 0.0 0.034 False False 0.00/10 0.00/13 0.00/8 0.00/7 0.00/7 0.00/12 0.00/7 0.00/6 0.25/4 5341839 C G False 1 0.0 0.0 0.045 False False 0.00/6 0.00/10 0.00/8 0.00/5 0.00/4 0.00/9 0.00/5 0.00/4 0.25/4 5341860 G C False 1 0.25 0.0 0.0 False False 0.25/4 0.00/4 0.00/1 0.00/2 0.00/4 0.00/1 0.00/2 0.00/1 5341862 G C False 1 0.25 0.0 0.0 False False 0.25/4 0.00/4 0.00/1 0.00/2 0.00/4 0.00/1 0.00/2 0.00/1 5341884 C A False 1 0.0 0.091 0.0 False False 0.00/6 0.00/7 0.00/4 0.33/6 0.00/5 0.00/8 0.00/2 0.00/4 0.00/4 5341886 T G False 1 0.0 0.0 0.034 False False 0.00/8 0.00/10 0.00/4 0.00/8 0.00/8 0.00/13 0.25/4 0.00/6 0.00/6 5342047 G T False 1 0.25 0.0 0.0 False False 0.25/4 0.00/5 0.00/7 0.00/4 0.00/5 0.00/1 5342050 C A False 1 0.25 0.0 0.0 False False 0.25/4 0.00/4 0.00/2 0.00/7 0.00/5 0.00/1 0.00/3 0.00/6 5342057 C T False 1 0.4 0.0 0.182 False True 0.40/5 0.00/4 0.00/2 0.00/7 0.00/4 0.00/3 0.17/6 0.50/2 5342059 A G False 1 0.111 0.0 0.2 False False 0.11/9 0.00/8 0.00/2 0.00/14 0.00/9 1.00/1 0.12/8 0.00/7 0.50/4 5342060 A T False 1 0.222 0.0 0.25 False False 0.22/9 0.00/8 0.00/2 0.00/14 0.00/9 1.00/1 0.12/8 0.00/7 0.75/4 5342144 C G False 1 0.0 0.056 0.0 False False 0.00/4 0.00/5 0.25/4 0.00/6 0.00/3 0.00/3 0.00/5 0.00/7 0.00/4 5342153 T C False 3 0.2 0.0 0.312 False False 0.20/10 0.00/8 0.00/5 0.00/15 0.00/9 0.60/5 0.29/7 0.08/12 0.50/8 5342165 C A False 1 0.0 0.0 0.048 False False 0.00/5 0.00/5 0.00/4 0.00/5 0.00/2 0.25/4 0.00/5 0.00/8 0.00/4 5342173 G T False 1 0.25 0.0 0.0 False False 0.25/4 0.00/3 0.00/2 0.00/8 0.00/5 0.00/2 0.00/3 0.00/3 0.00/4 5342201 C A False 1 0.0 0.0 0.062 False False 0.00/5 0.00/5 0.00/3 0.00/5 0.00/2 0.25/4 0.00/4 0.00/5 0.00/3 5342248 C A False 1 0.0 0.083 0.0 False False 0.00/4 0.00/4 0.00/1 0.00/3 0.25/4 0.00/4 0.00/4 0.00/6 0.00/5 5342293 A G False 1 0.0 0.0 0.065 False False 0.00/6 0.00/4 0.00/2 0.00/8 0.00/8 0.00/8 0.00/9 0.25/4 0.10/10 5342319 C T False 1 0.0 0.6 True True 0.50/2 0.00/2 0.00/3 0.00/5 1.00/3 0.20/5 0.33/3 1.00/4 5342426 G A True 3 0.154 0.765 True True 0.67/3 0.00/3 1.00/2 0.00/6 0.00/2 1.00/4 0.57/7 0.00/1 1.00/5 5342449 T A True 1 0.095 0.0 False False 0.00/3 0.25/4 0.00/5 0.00/6 0.17/6 0.00/6 0.00/7 0.00/3 0.00/6 5342462 T A True 1 0.04 0.036 False False 0.00/3 0.17/6 0.00/6 0.00/8 0.00/5 0.00/7 0.00/12 0.25/4 0.00/5 5342464 A G True 1 0.042 0.038 False False 0.33/3 0.17/6 0.00/6 0.00/7 0.00/5 0.00/6 0.00/12 0.25/4 0.00/4 5342467 A C True 1 0.0 0.0 0.036 False False 0.00/4 0.00/6 0.00/7 0.00/8 0.00/6 0.00/7 0.00/13 0.00/4 0.25/4 5342468 G T True 1 0.0 0.0 0.042 False False 0.00/4 0.00/5 0.00/7 0.00/7 0.00/4 0.00/6 0.00/12 0.00/2 0.25/4 5342519 T C True 1 0.1 0.0 0.061 False False 0.10/10 0.00/10 0.00/7 0.00/9 0.00/6 0.00/9 0.09/11 0.25/4 0.00/9 5342524 A G True 6 0.5 0.156 0.576 False False 0.50/10 0.00/10 0.71/7 0.00/9 0.00/6 0.89/9 0.45/11 0.25/4 0.56/9 5342527 G T True 5 0.714 0.16 0.826 True False 0.71/7 0.00/8 0.67/6 0.00/8 0.00/3 1.00/8 0.62/8 0.50/2 1.00/5 5342537 A G True 5 0.8 0.152 0.871 True False 0.80/10 0.00/11 0.62/8 0.00/8 0.00/6 1.00/9 0.60/10 1.00/2 1.00/10 5342540 A G True 1 0.0 0.0 0.029 False False 0.00/9 0.00/11 0.00/8 0.00/8 0.00/6 0.00/9 0.00/12 0.25/4 0.00/10 5342541 A G True 1 0.0 0.0 0.029 False False 0.00/10 0.00/11 0.00/8 0.00/8 0.00/6 0.00/9 0.00/11 0.25/4 0.00/10 5342542 A G True 1 0.0 0.0 0.029 False False 0.00/10 0.00/11 0.00/8 0.00/8 0.00/6 0.00/9 0.00/12 0.25/4 0.00/10 5342543 T G True 1 0.0 0.0 0.03 False False 0.00/8 0.00/11 0.00/8 0.00/8 0.00/6 0.00/9 0.00/10 0.25/4 0.00/10 5342545 T A True 1 0.0 0.0 0.029 False False 0.00/9 0.00/10 0.00/8 0.00/8 0.00/6 0.00/9 0.00/11 0.25/4 0.00/10 5342565 G A True 5 0.571 0.2 0.833 True True 0.57/7 0.00/8 0.56/9 0.00/5 0.00/3 1.00/8 0.57/7 0.50/2 1.00/7 5342573 C A True 1 0.0 0.1 0.0 False False 0.00/5 0.00/2 0.25/4 0.00/4 0.00/3 0.00/2 0.00/3 0.00/4 5342583 C A True 1 0.0 0.0 0.071 False False 0.00/5 0.00/2 0.00/3 0.00/4 0.25/4 0.00/3 0.00/3 0.00/4 5342618 G T True 1 0.0 0.048 0.043 False False 0.00/8 0.17/6 0.00/7 0.00/4 0.00/4 0.25/4 0.00/8 0.00/3 0.00/8 5342620 G A True 5 0.625 0.136 0.783 True True 0.62/8 0.00/6 0.43/7 0.00/4 0.00/5 0.75/4 0.62/8 0.67/3 1.00/8 5342666 A C True 4 0.353 0.032 0.468 False False 0.35/17 0.00/6 0.11/9 0.00/8 0.00/8 1.00/10 0.17/12 0.25/8 0.47/17 5342800 C G True 1 0.0 0.0 0.042 False False 0.00/5 0.00/4 0.00/3 0.00/4 0.00/3 0.00/7 0.00/6 0.25/4 0.00/7 5342863 G T True 1 0.0 0.067 False False 0.00/3 0.00/2 0.00/6 0.00/6 0.00/5 0.00/5 0.00/4 0.25/4 0.00/2 5343048 G T True 1 0.0 0.0 0.071 False False 0.00/4 0.00/1 0.00/1 0.00/6 0.00/2 0.00/3 0.00/5 0.25/4 0.00/2 5343079 T A True 5 0.111 0.037 0.519 False False 0.11/9 0.00/6 0.25/4 0.00/10 0.00/7 0.57/7 0.25/8 0.75/8 0.50/4 5343170 G C True 1 0.0 0.0 0.091 False False 0.00/4 0.00/2 0.00/1 0.00/5 0.00/4 0.25/4 0.00/2 0.00/3 0.00/2 5343288 C A True 1 0.0 0.0 0.118 False False 0.00/5 0.00/5 0.00/5 0.00/5 0.00/5 0.33/6 0.00/5 0.00/4 0.00/2 5343292 G A True 1 0.0 0.0 0.1 False True 0.00/5 0.00/6 0.00/1 0.00/6 0.00/3 0.00/3 0.25/4 5343295 C A True 1 0.2 0.0 0.222 False False 0.20/5 0.00/4 0.00/6 0.00/5 0.00/4 0.50/6 0.00/5 0.00/4 0.33/3 5343323 G T True 1 0.0 0.0 0.286 False False 0.00/5 0.00/5 0.00/2 0.00/6 0.33/3 0.25/4 5343373 T C True 1 0.0 0.0 0.048 False False 0.00/6 0.00/7 0.00/5 0.00/3 0.00/8 0.00/6 0.25/4 0.00/3 0.00/8 5343400 T G True 1 0.0 0.0 0.042 False False 0.00/6 0.00/4 0.00/5 0.00/1 0.00/5 0.00/6 0.00/5 0.25/4 0.00/9 5343510 T C True 3 0.25 0.067 0.391 False False 0.25/4 0.00/8 0.20/10 0.00/6 0.00/6 0.50/6 0.00/5 0.00/5 0.86/7 5343511 G A True 2 0.167 0.6 False True 0.00/1 0.00/6 0.50/8 0.00/5 0.00/5 1.00/3 0.00/2 0.50/4 1.00/1 5343532 A T True 1 0.0 0.0 0.043 False False 0.00/4 0.00/8 0.00/10 0.00/10 0.00/7 0.00/6 0.00/6 0.25/4 0.00/7 5343534 A C True 1 0.0 0.0 0.043 False False 0.00/4 0.00/8 0.00/10 0.00/10 0.00/7 0.00/6 0.00/6 0.25/4 0.00/7 5343536 T C True 1 0.0 0.0 0.043 False False 0.00/4 0.00/8 0.00/11 0.00/10 0.00/7 0.00/6 0.00/6 0.25/4 0.00/7 5343685 C T True 3 0.2 0.538 False True 0.50/2 0.00/3 0.50/4 0.00/2 0.00/1 1.00/1 0.33/6 0.00/2 1.00/4 5343700 G T True 1 0.0 0.0 0.053 False False 0.00/8 0.00/9 0.00/13 0.00/7 0.00/4 0.00/6 0.00/3 0.25/4 0.00/6 5343716 T C True 1 0.0 0.048 0.056 False False 0.00/9 0.10/10 0.06/17 0.00/10 0.00/5 0.00/10 0.10/10 0.25/4 0.00/12 5343718 G A True 2 0.25 0.03 0.095 False True 0.25/8 0.00/7 0.07/15 0.00/7 0.00/4 0.25/8 0.00/4 0.00/3 0.00/6 5343819 G T True 1 0.0 0.069 0.0 False False 0.00/8 0.00/8 0.00/9 0.00/6 0.33/6 0.00/7 0.00/4 0.00/5 0.00/1 5343860 T A True 5 0.6 0.053 0.522 False False 0.60/10 0.00/9 0.25/8 0.00/12 0.00/9 0.86/7 0.40/5 0.33/9 0.50/2 5343874 G C True 1 0.0 0.0 0.083 False False 0.00/6 0.00/6 0.00/7 0.00/7 0.00/7 0.00/6 0.00/2 0.25/4 5343882 C A True 1 0.091 0.0 False False 0.00/3 0.00/3 0.00/4 0.25/4 0.00/2 0.00/3 0.00/1 5343928 A T True 3 0.714 0.027 0.571 True False 0.71/7 0.00/9 0.11/9 0.00/9 0.00/10 1.00/6 0.00/4 0.50/4 5343972 C A False 0 0.0 0.4 False False 0.00/1 0.00/6 0.00/2 0.00/1 0.00/2 1.00/1 0.00/2 0.00/1 1.00/1 5343974 T C False 1 0.0 0.083 False False 0.00/1 0.00/11 0.00/6 0.00/7 0.00/8 0.25/4 0.00/4 0.00/3 0.00/1 5343975 A C False 1 0.0 0.083 False False 0.00/1 0.00/11 0.00/6 0.00/7 0.00/8 0.25/4 0.00/4 0.00/3 0.00/1 5343976 T A False 1 0.0 0.167 False False 0.00/1 0.00/10 0.00/6 0.00/7 0.00/8 0.25/4 0.00/4 0.00/3 1.00/1 5343977 T C False 1 0.0 0.083 False False 0.00/1 0.00/11 0.00/6 0.00/7 0.00/8 0.25/4 0.00/4 0.00/3 0.00/1 5343984 T C False 1 0.0 0.182 False False 0.00/1 0.00/11 0.00/4 0.00/7 0.00/8 0.33/3 0.00/3 0.25/4 0.00/1 5343987 C A False 0 0.0 0.5 False False 0.00/5 0.00/2 0.00/2 1.00/1 0.00/1 0.00/1 1.00/1 5344003 T A False 0 0.0 0.25 False False 0.00/2 0.00/12 0.00/3 0.00/6 0.00/6 1.00/1 0.00/3 0.00/3 1.00/1 5344011 A G False 1 0.034 0.111 False False 0.00/1 0.08/13 0.00/4 0.00/6 0.00/6 0.00/1 0.25/4 0.00/3 0.00/1 5344012 T A False 1 0.0 0.125 False False 0.00/1 0.00/13 0.00/3 0.00/5 0.00/6 0.00/1 0.25/4 0.00/2 0.00/1 5344013 T G False 1 0.036 0.111 False False 0.00/1 0.08/13 0.00/4 0.00/5 0.00/6 0.00/1 0.25/4 0.00/3 0.00/1 5344014 T A False 1 0.034 0.111 False False 0.00/1 0.08/13 0.00/4 0.00/6 0.00/6 0.00/1 0.25/4 0.00/3 0.00/1 5344041 C A False 0 0.0 0.4 False False 0.00/6 0.00/2 0.00/1 1.00/1 0.00/1 0.00/2 1.00/1 5344066 T G False 1 0.053 0.0 False False 0.00/2 0.00/10 0.25/4 0.00/3 0.00/2 0.00/1 0.00/3 0.00/4 0.00/1 5344084 A C False 1 0.0 0.048 0.0 False False 0.00/4 0.00/12 0.00/3 0.25/4 0.00/2 0.00/1 0.00/4 0.00/2 0.00/3 5344085 A C False 1 0.0 0.048 0.0 False False 0.00/4 0.00/12 0.00/3 0.25/4 0.00/2 0.00/1 0.00/4 0.00/2 0.00/3 5344090 T A False 1 0.333 0.0 0.0 False False 0.33/6 0.00/13 0.00/3 0.00/3 0.00/4 0.00/1 0.00/4 0.00/2 0.00/3 5344104 C T False 0 0.0 0.133 0.25 False True 0.00/4 0.11/9 0.00/2 0.00/2 0.50/2 0.00/1 0.00/2 0.00/2 0.67/3 5344197 T A False 1 0.333 0.059 False False 0.33/6 0.00/6 0.00/1 0.00/7 0.33/3 0.00/1 0.00/2 5344277 A G False 1 0.0 0.111 False False 0.00/4 0.00/4 0.25/4 0.00/1 0.00/2 0.00/1 5344287 T C False 1 0.25 0.0 False False 0.25/4 0.00/4 0.00/4 0.00/2 5344288 T C False 1 0.25 0.0 False False 0.25/4 0.00/4 0.00/4 0.00/2 5344301 A C False 1 0.125 False False 0.00/3 0.00/4 0.25/4 0.00/2