Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 44
  seen in >= 2 oysters: 8
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 6  [CpG-destroying: 5]
    5321370 C>A  Pum=0.4  Qui=0.143  Rio=0.758
    5321441 C>T  Pum=0.625  Qui=0.13  Rio=0.759
    5321493 G>A  Pum=  Qui=0.143  Rio=1.0
    5321498 C>T  Pum=0.667  Qui=0.111  Rio=0.833
    5321552 C>T  Pum=0.6  Qui=0.062  Rio=0.857
    5321634 G>A  Pum=0.75  Qui=0.125  Rio=0.778

15 CpGs in target; 5 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    57.1     21        2    8.7
Qui1     Qui    96.6     29        0    6.7
Qui2     Qui    83.7     43        2    7.3
Qui3     Qui    89.7     29        0    9.6
Qui4     Qui    95.1     61        0    8.2
Rio1     Rio    38.9     18        2   11.2
Rio2     Rio    80.0     30        2    8.9
Rio3     Rio    65.4     26        1    6.2
Rio4     Rio    36.4     22        2    4.4