Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 1
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    31.6     19        0   21.5
Qui1     Qui    41.4     29        0   29.5
Qui2     Qui    31.2     16        0   18.0
Qui3     Qui    25.0     16        0   20.0
Qui4     Qui    38.5     13        0   14.0
Rio1     Rio     0.0     25        0   25.5
Rio2     Rio     0.0     20        0   20.0
Rio3     Rio     7.7     13        0   14.5
Rio4     Rio     0.0     26        0   26.0