Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 44
  seen in >= 2 oysters: 11
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

31 CpGs in target; 10 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    67.9    184        0    6.9
Qui1     Qui    60.8    176        0    7.7
Qui2     Qui    53.0    302        0   11.5
Qui3     Qui    41.6    497        0   21.1
Qui4     Qui    52.6    137        0    5.9
Rio1     Rio    11.3    133        0    5.0
Rio2     Rio    16.0    306        0   13.6
Rio3     Rio    34.8     66        0    2.7
Rio4     Rio     3.1    227        0   11.0