Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 2]
    50748353 C>T  Pum=1.0  Qui=0.214  Rio=1.0
    50748392 C>T  Pum=0.0  Qui=0.231  Rio=1.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    85.7      7        0   11.5
Qui1     Qui    75.0      4        1    7.0
Qui2     Qui    33.3      3        1    6.0
Qui3     Qui     0.0      1        1    5.0
Qui4     Qui   100.0      2        0    5.0
Rio1     Rio     0.0      5        1    9.0
Rio2     Rio     0.0      1        0    3.0
Rio3     Rio     0.0      3        1    6.0
Rio4     Rio     0.0      1        1    6.0