Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 9
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 5  [CpG-destroying: 4]
    50659570 C>A  Pum=  Qui=0.368  Rio=1.0
    50659617 G>A  Pum=0.0  Qui=0.2  Rio=1.0
    50659622 C>T  Pum=  Qui=0.4  Rio=1.0
    50659631 C>T  Pum=  Qui=0.429  Rio=1.0
    50659653 C>T  Pum=  Qui=0.5  Rio=1.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      8        0   10.0
Qui1     Qui    66.7      3        0    5.0
Qui2     Qui              0        0    6.0
Qui3     Qui   100.0      2        0    5.5
Qui4     Qui   100.0      4        0    9.0
Rio1     Rio     0.0      3        0    9.0
Rio2     Rio     0.0      3        0   13.5
Rio3     Rio     0.0      2        0    6.0
Rio4     Rio     0.0      5        0   11.0