Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 7
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    50657143 C>T  Pum=0.857  Qui=0.448  Rio=0.968

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      2        1    9.0
Qui1     Qui    50.0      6        1   16.0
Qui2     Qui    50.0      6        1   10.5
Qui3     Qui    33.3      3        1    8.0
Qui4     Qui    33.3      3        0   12.0
Rio1     Rio     0.0      2        1    9.0
Rio2     Rio     0.0      2        1   13.0
Rio3     Rio     0.0      4        1   10.0
Rio4     Rio     0.0      1        1    8.0