Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 11
  seen in >= 2 oysters: 8
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    50586319 G>A  Pum=0.727  Qui=0.227  Rio=0.833

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     11        0   15.0
Qui1     Qui    33.3      6        0   11.0
Qui2     Qui   100.0      3        0    5.5
Qui3     Qui    60.0      5        0    5.5
Qui4     Qui    66.7      6        0    8.0
Rio1     Rio     0.0      5        0    7.5
Rio2     Rio     0.0      4        0    8.0
Rio3     Rio     0.0      7        0   11.0
Rio4     Rio     0.0      3        0    6.0