Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 6
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    50586072 C>T  Pum=  Qui=0.333  Rio=1.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      8        1   11.0
Qui1     Qui     0.0      2        1    7.0
Qui2     Qui    33.3      6        1    9.0
Qui3     Qui    50.0      6        1   10.0
Qui4     Qui    85.7      7        0   13.0
Rio1     Rio     0.0      3        0    5.0
Rio2     Rio     0.0      5        1   11.0
Rio3     Rio     0.0      3        1    8.5
Rio4     Rio     0.0      6        1   11.0