Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 2
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    50580014 G>T  Pum=1.0  Qui=0.278  Rio=1.0

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      6        0    8.0
Qui1     Qui    77.8      9        0   10.0
Qui2     Qui    75.0      8        0    9.0
Qui3     Qui    50.0     12        0   17.0
Qui4     Qui   100.0      7        0    9.0
Rio1     Rio     0.0     10        0   11.5
Rio2     Rio    16.7      6        0    8.0
Rio3     Rio     0.0      8        0    9.0
Rio4     Rio     0.0     11        0   12.0