Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    50573364 C>T  Pum=0.0  Qui=0.389  Rio=1.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      4        0   10.0
Qui1     Qui    50.0      6        0    7.5
Qui2     Qui    50.0      6        1   11.0
Qui3     Qui    66.7      3        1   10.0
Qui4     Qui   100.0      9        0   14.5
Rio1     Rio     0.0      7        1   11.0
Rio2     Rio     0.0      3        1    8.0
Rio3     Rio     0.0      6        1   12.0
Rio4     Rio    20.0      5        1    8.0