Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 29
  seen in >= 2 oysters: 6
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 4  [CpG-destroying: 2]
    50562141 C>A  Pum=1.0  Qui=0.4  Rio=1.0
    50562175 G>A  Pum=1.0  Qui=0.417  Rio=1.0
    50562197 C>T  Pum=1.0  Qui=0.455  Rio=1.0
    50562431 C>A  Pum=0.0  Qui=0.286  Rio=0.952

24 CpGs in target; 18 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     6.3     79        0    8.9
Qui1     Qui    36.5     85        0    7.4
Qui2     Qui    52.2     69        0   11.4
Qui3     Qui    48.8     82        0   10.0
Qui4     Qui    36.4     66        0    7.9
Rio1     Rio    10.6    142        0   10.6
Rio2     Rio     2.0     51        0    7.4
Rio3     Rio    22.7     75        0    8.0
Rio4     Rio    31.1     45        0    8.5