Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 41
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

27 CpGs in target; 14 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    14.4     97        0    5.0
Qui1     Qui    66.7     93        0    6.7
Qui2     Qui    53.4     88        0    4.9
Qui3     Qui    36.4    118        0    8.7
Qui4     Qui    92.5     93        0    6.6
Rio1     Rio     1.3     76        0    4.1
Rio2     Rio     2.5    118        0    5.9
Rio3     Rio     3.2     31        0    4.5
Rio4     Rio     0.0    117        0    6.9