Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 18
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    50552734 A>T  Pum=0.0  Qui=0.324  Rio=0.968

20 CpGs in target; 7 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     1.1     87        0    4.9
Qui1     Qui    51.2     43        0    5.4
Qui2     Qui    45.9     74        0    4.7
Qui3     Qui    44.3     97        0    6.1
Qui4     Qui    83.1     71        0    5.4
Rio1     Rio     4.9     82        0    6.5
Rio2     Rio     3.4     89        0    6.4
Rio3     Rio     0.0     35        0    2.7
Rio4     Rio     5.7     88        0    5.2