Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    12.5      8        0   12.0
Qui1     Qui    40.0      5        0    9.0
Qui2     Qui    29.4     17        0   27.0
Qui3     Qui    41.2     17        0   29.0
Qui4     Qui    37.5      8        0   14.0
Rio1     Rio     0.0      3        0    6.0
Rio2     Rio     0.0      9        0   15.0
Rio3     Rio     0.0      9        0   11.0
Rio4     Rio     0.0      7        0   13.0