Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 21
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    50537021 G>A  Pum=1.0  Qui=0.405  Rio=0.947

24 CpGs in target; 9 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     7.1     70        0    5.6
Qui1     Qui    50.5     93        0    7.2
Qui2     Qui    31.5    200        0   12.5
Qui3     Qui    38.3    154        0   11.8
Qui4     Qui    52.9     87        0    7.5
Rio1     Rio     2.2     92        0    6.1
Rio2     Rio     0.0    105        0    6.3
Rio3     Rio     1.1     93        0    6.0
Rio4     Rio     2.6     78        0    6.0