Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 43
  seen in >= 2 oysters: 8
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    50532260 C>A  Pum=0.0  Qui=0.35  Rio=1.0
    50532335 C>T  Pum=  Qui=0.296  Rio=1.0

16 CpGs in target; 10 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    55.0     20        0    4.4
Qui1     Qui    73.4     64        1    8.3
Qui2     Qui    55.0     40        1    8.8
Qui3     Qui    81.5     54        1    9.8
Qui4     Qui    84.1     44        0    7.2
Rio1     Rio    61.0     41        1    8.0
Rio2     Rio    54.1     61        1    7.1
Rio3     Rio    52.4     42        0    6.2
Rio4     Rio    44.4     45        1    8.3