Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 2
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    50518803 G>A  Pum=  Qui=0.391  Rio=1.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    50.0      2        0    3.0
Qui1     Qui    50.0      6        0    8.0
Qui2     Qui    28.6      7        0   10.0
Qui3     Qui    33.3      3        0    4.0
Qui4     Qui    57.1      7        0   12.0
Rio1     Rio     0.0     10        0   17.0
Rio2     Rio     0.0      9        0   13.0
Rio3     Rio     0.0      5        0    8.0
Rio4     Rio     0.0     12        0   14.0