Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 0]
    50186842 C>A  Pum=0.8  Qui=0.273  Rio=0.875
    50186855 A>T  Pum=0.667  Qui=0.333  Rio=0.917

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    33.3      3        0   13.0
Qui1     Qui    57.1      7        0    9.0
Qui2     Qui    70.0     10        0   20.0
Qui3     Qui   100.0      4        0   13.0
Qui4     Qui    62.5      8        0   12.5
Rio1     Rio              0        0   14.0
Rio2     Rio              0        0   13.5
Rio3     Rio     0.0      3        0   23.5
Rio4     Rio    20.0      5        0   17.5