Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 27
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

24 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    97.1     35        0    5.6
Qui1     Qui    60.7     28        0    5.4
Qui2     Qui    90.0     60        0    7.6
Qui3     Qui    92.6     27        0    7.3
Qui4     Qui    38.1     42        0    6.8
Rio1     Rio    74.5     55        0    8.5
Rio2     Rio    80.6     36        0    6.2
Rio3     Rio    77.8     36        0    6.0
Rio4     Rio    80.6     31        0    7.0