Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 1
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    92.3     13        0   13.0
Qui1     Qui   100.0      5        0    7.0
Qui2     Qui    86.7     15        0   15.0
Qui3     Qui   100.0     11        0   12.0
Qui4     Qui   100.0      6        0    6.0
Rio1     Rio    40.0     25        0   26.5
Rio2     Rio    60.0     10        0   12.0
Rio3     Rio    62.5      8        0   10.0
Rio4     Rio    45.8     24        0   25.0