Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 22
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 0]
    3956386 T>A  Pum=0.2  Qui=0.209  Rio=0.743
    3956716 T>A  Pum=0.5  Qui=0.133  Rio=0.744

12 CpGs in target; 12 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    41.0     39        0    4.6
Qui1     Qui    73.3     45        0   10.0
Qui2     Qui    84.0     50        0    9.2
Qui3     Qui    81.8     44        0    6.8
Qui4     Qui    76.4     72        0    8.8
Rio1     Rio    62.1     66        0    9.7
Rio2     Rio    59.3     59        0    7.6
Rio3     Rio    64.7     34        0    5.8
Rio4     Rio    74.6     67        0    7.8