Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 7
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 4  [CpG-destroying: 2]
    3693083 G>T  Pum=  Qui=0.273  Rio=0.905
    3693112 G>A  Pum=  Qui=0.167  Rio=0.889
    3693120 G>A  Pum=  Qui=0.167  Rio=0.889
    3693125 A>T  Pum=0.8  Qui=0.214  Rio=0.935

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      3        0    5.0
Qui1     Qui    66.7      3        0    6.0
Qui2     Qui   100.0      3        0    6.0
Qui3     Qui    55.6      9        0   10.0
Qui4     Qui     0.0      3        0    4.0
Rio1     Rio     0.0      7        0    9.5
Rio2     Rio     0.0      4        0    8.0
Rio3     Rio     0.0      4        0    5.0
Rio4     Rio     0.0      4        0   10.0